Ornamental use of Guarianthe skinneri (Orchidaceae), in Chiapas and Guatemala, is partially responsible for its diversity and genetic structure
DOI:
https://doi.org/10.21829/abm124.2018.1303Keywords:
Candelaria, conservation, NOM-059-SEMARNAT-2010, orchids, population structure, threatened speciesAbstract
Background and Aims: Guarianthe skinneri is a native orchid from Chiapas, Mexico, with a Central American distribution, which is threatened by extraction and illegal trade. For this reason, it is classified as threatened in the Mexican rule NOM-059-SEMARNAT-2010. In the region of Soconusco (Chiapas, Mexico) and Guatemala, it is commonly called “Candelaria”, because its flowering time coincides with the dates of the virgin of the same name. In Tapachula city (Chiapas, Mexico), it is common to find plants of this species in the courtyards of private gardens. The objective of this work was to estimate the diversity and genetic structure of G. skinneri from samples obtained from an urban population of Tapachula and from its comparison with five wild populations of Guatemala, in order to determine the potential of the urban population as a source of propagules and understand if genetic distance between populations could be related with the geographic distance that separates them.
Methods: Nucleotidic variation in sequences of two regions of ribosomal nuclear DNA (ITS 1-2 and ITS 3-4) was used as genetic marker. The sequences were concatenated obtaining the conventional parameters of diversity and genetic structure.
Key results: We observed populations with low and high genetic diversity. A total of 38 haplotypes were observed, whose number per population was between 1 and 15. Haplotidic diversity (Hd) was between 0 and 1, the average number of polymorphic sites was between 0 and 165. The nucleotidic diversity (p) and the average number of nucleotidic differences shows that Tapachula had the greatest diversity, followed by populations of Guatemala. The genetic structure was moderate (Fst=0.083) and the genetic distance was not associated with the geographic distance of the populations.
Conclusions: The diversity patterns and genetic structure between populations were attributed to anthropogenic factors derived from its ornamental use, especially in the city of Tapachula.
Downloads
References
Alamillo-Vásquez, J. A. 2013. Evaluación de la estabilidad genética de Laelia anceps subsp. dawsonii Rolfe propagada in vitro utilizando marcadores moleculares RAPD. Tesis de licenciatura. Universidad Veracruzana. Xalapa, Veracruz, México. 52 pp.
Álvarez, I. y J. F. Wendel. 2003. Ribosomal ITS sequences and plant phylogenetic inference. Molecular Phylogenetics and evolution 29(3): 417-434. DOI: https://doi.org/10.1016/s1055-7903(03)00208-2 DOI: https://doi.org/10.1016/S1055-7903(03)00208-2
Arboleda, B. C. E. 2008. Polimorfismo y divergencia en genes implicados en la resistencia al frío en Drosophila. Tesis de doctorado. Universitat de Barcelona. Barcelona, España. 221 pp.
Ávila-Díaz, I. y K. Oyama. 2007. Conservation genetics of an endemic and endangered epiphytic Laelia speciosa (Orchidaceae). American Journal of Botany 94(2): 184-193. DOI: https://doi.org/10.3732/ajb.94.2.184 DOI: https://doi.org/10.3732/ajb.94.2.184
Bertolini, V., A. Damon y C. Ibarra-Cerdeña. 2016. Atlas de las orquídeas del Soconusco: modelos digitales de nichos ambientales entre Centro y Sudamérica. El Colegio de la Frontera Sur. Tapachula, México. 56 pp.
Broadhurst, L., M. Breed, A. Lowe, J. Bragg, R. Catullo, D. Coates, F. Encinas-Viso, N. Gellie, E. James, S. Krauss, B. Potts, M. Rossetto, M. Shepherd y M. Byrne. 2017. Genetic diversity and structure of the Australian flora. Diversity and Distributions 23(1): 41-52. DOI: https://doi.org/10.1111/ddi.12505 DOI: https://doi.org/10.1111/ddi.12505
Brzosko, E., A. Wroblewsks, E. Jermakowicz y A. Hermaniuk. 2013. High level of genetic variation within clonal orchid Goodyera repens. Plant Systematics and Evolution 299(8): 1537-1548. DOI: https://doi.org/10.1007/s00606-013-0817-7 DOI: https://doi.org/10.1007/s00606-013-0817-7
Castillo-Cobián, A. 2007. La selección natural a nivel molecular. In: Eguiarte, L. E., V. Souza y X. Aguirre (eds.). Ecología molecular. Secretaría de Medio Ambiente y Recursos Naturales (SEMARNAT), Instituto Nacional de Ecología (INE), Universidad Nacional Autónoma de México (UNAM), Comisión Nacional para el Conocimiento y Uso de la Biodiversidad (CONABIO). México, D.F., México. Pp. 11-48.
Clement, M., D. Posada y K. A. Crandall. 2000. TCS: a computer program to estimate gene genealogies. Molecular Ecology 9(10): 1657-1660. DOI: https://doi.org/10.1046/j.1365-294x.2000.01020.x DOI: https://doi.org/10.1046/j.1365-294x.2000.01020.x
Coutiño-Cortés, A. G., V. Bertolini, L. Iracheta-Donjuan, L. Ruiz-Montoya y J. F. Valle-Mora. 2017. In vitro callogenesis induction of Guarianthe skinneri (Bateman) Dressler & W.E. Higgins (Orchidaceae). Acta Agronómica 66(2): 254-259. DOI: https://doi.org/10.15446/acag.v66n2.57982 DOI: https://doi.org/10.15446/acag.v66n2.57982
Damon, A. 2010. Diversidad y conservación de las orquídeas del corredor biológico Tacaná-Boquerón. Proyecto CHIS-2006-C06-45802. 2007-2010. Informe final. Consejo Nacional de Ciencia y Tencnología (CONACyT), Fondos Mixtos-Chiapas. Chiapas, México.
Damon, A. 2013. Conservation status and strategies for the preservation of orchids in the Soconusco region of southeast Mexico. Lankesteriana 13(1-2): 27-31. DOI: https://doi.org/10.15517/lank.v0i0.11530 DOI: https://doi.org/10.15517/lank.v0i0.11530
de la Cerda, S. R. 1940. Los Mames. Revista Mexicana de Sociología 2(3): 61-100. DOI: https://doi.org/10.2307/3537143
Dobles, S. L. 1945. La Guaria Morada. La flor nacional de Costa Rica. Revista del Instituto de Defensa del Café de Costa Rica 15(127): 315-320.
Doyle, J. J. y J. L. Doyle. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemistry Bulletin 19(1): 11-15.
Eastman Kodak Company. 1998-2002. KODAK ID Image Analysis Software v. 3.6. Scientific Imaging Systems Rochester. New York, USA. 14650.
Excoffier, L., G. Laval y S. Schneider. 2005. Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evolutionary Bioinformatics 1: 47-50. DOI: https://doi.org/10.1177/117693430500100003 DOI: https://doi.org/10.1177/117693430500100003
Fox, J. 2005. The R Commander: A basic statistics graphical user interface to R. Journal of Statistical Software 14(9): 1-42. DOI: https://doi.org/10.18637/jss.v014.i09 DOI: https://doi.org/10.18637/jss.v014.i09
Fox, J. 2007. Extending the R Commander by "plug in" packages. R News 7(3): 46-52.
García-Bautista, M., M. T. Pérez-Gómez y L. Ruiz-Montoya. 2014. Diversidad genética de especies de árboles plantados en el Cerrito de San Cristóbal. In: Ruiz-Montoya, L. (ed.). Diversidad biológica y enriquecimiento florístico del Cerrito de San Cristóbal. El Colegio de la Frontera Sur. San Cristóbal de las Casas, México. Pp. 123-146.
Hágsater, E., M. A. Soto-Arenas, G. A. Salazar Chávez, R. Jiménez Machorro, M. A. Lopéz-Rosas y R. L. Dressler. 2005. Orchids of Mexico. Instituto Chinoín. Cd. Mx., Mexico. 304 pp.
Halbinger, F. y M. Soto. 1997. Laelias of Mexico. Orquídea (Méx.) 15: 1-160.
Hamrick, J. L. y M. J. W. Godt. 1990. Allozyme diversity in plant species. In: Brown, A. H. D., M. T. Clegg, A. L. Kahler y B. S. Weir (eds.). Plant population genetics, breeding, and genetic resources. Sinauer Associates, Inc. Sunderland, USA. Pp. 43-63.
Hamrick, J. L., M. J. W. Godt, D. A. Murawsky y M. D. Loveless. 1991. Correlations between species traits and allozyme diversity: implications for conservation biology. In: Falk, D. A. y K. E. Holsinger (eds.). Genetics and conservation of rare plants. Oxford University Press. Oxford, UK. Pp. 75-86.
Hedrick, P. W. 2000. Genetics populations. 2a ed. Jones and Bartlett Publishers. Sudbary, USA. 553 pp.
Hijmans, R. J., S. E. Cameron, J. L. Parra, P. G. Jones y A. Jarvis. 2005. Very high resolution interpolated climate surfaces for global land areas. International Journal of Climatology 25(15): 1965-1978. DOI: https://doi.org/10.1002/joc.1276 DOI: https://doi.org/10.1002/joc.1276
Jiménez-Bautista, L. 2009. Diversidad de la familia Orchidaceae en el Corredor Boquerón-Tacaná, Chiapas. Tesis de licenciatura. Instituto Tecnológico del Valle de Oaxaca. Oaxaca, México. 124 pp.
Kimura, M. 1980. A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16(2): 111-120. DOI: https://doi.org/10.1007/BF01731581 DOI: https://doi.org/10.1007/BF01731581
Librado, P. y J. Rozas. 2009. DnaSP V5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25(11): 1451-1452. DOI: https://doi.org/10.1093/bioinformatics/btp187 DOI: https://doi.org/10.1093/bioinformatics/btp187
Lu, J., X. Hu, J. Liu y H. Wang. 2011. Genetic diversity and population structure of 151 Cymbidium sinense cultivars. Journal of Horticulture and Forestry 3(4): 104-114.
McCarthy, C. 1998-2016. Chromas Version 2.4.4. School of Health Science, Griffith University. Queensland, Australia.
Nei, M. y T. Gojobori. 1986. Simple methods for estimating the numbers of synonymous and non-synonymous nucleotide substitutions. Molecular Biology and Evolution 3(5): 418-426. DOI: https://doi.org/10.1093/oxfordjournals.molbev.a040410 DOI: https://doi.org/10.1093/oxfordjournals.molbev.a040410
Oyama, K. 1993. Conservation biology of tropical trees: demographic and genetic considerations. Environment Update 1: 17-32.
Pillon, Y., F. Qamaruz-Zaman, M. F. Fay, F. Hendoux y Y. Piquot. 2007. Genetic diversity and ecological differentiation in the endangered fen orchid (Liparis loeselii). Conservation Genetics 8(1): 177-184. DOI: https://doi.org/10.1007/s10592-006-9160-7 DOI: https://doi.org/10.1007/s10592-006-9160-7
Pinheiro, L. R., A. R. C. Rabbani, A. V. C. da Silva, A. da Ledo Silva, K. L. G. Pereira y L. E. C. Diniz. 2012. Genetic diversity and population structure in the Brazilian Cattleya labiata (Orchidaceae) using RAPD and ISSR markers. Plant Systematics and Evolution 298(10): 1815-1825. DOI: https://doi.org/10.1007/s00606-012-0682-9 DOI: https://doi.org/10.1007/s00606-012-0682-9
Piñero, D., J. Caballero-Mellado, D. Cabrera-Toledo, C. E. Canteros, A. Casas, A. Castañeda Sortibrán, A. Castillo, R. Cerritos, O. Chassin-Noria, P. Colunga-García Marín, P. Delgado, P. Díaz-Jaimes, L. Eguiarte, A. E. Escalante, B. Espinoza, A. Fleury, S. Flores Ramírez, G. Fragoso, J. González-Astorga, V. Islas Villanueva, E. Martínez, F. Martínez, J. Martínez-Castillo, A. Mastretta Yanes, R. Medellín, L. Medrano-González, F. Molina-Freaner, B. Morales Vela, A. Murguía Vega, E. Payró de la Cruz, M. R. Reyes-Montes, M. R. Robles Saavedra, G. Rodríguez-Arellanes, L. Rojas Bracho, R. Romero-Martínez, J. H. Sahaza-Cardona, R. Salas Lizana, E. Sciutto, C. Scott Baker, Y. Schramm Urrutia, C. Silva, V. Souza, M. L. Taylor, J. Urbán Ramírez, M. Uribe-Alcocer, M. J. Vázquez Cuevas, E. Vázquez-Domínguez, A. P. Vovides, A. Wegier, A. Zaldívar Riverón y G. Zúñiga. 2008. La diversidad genética como instrumento para la conservación y el aprovechamiento de la biodiversidad: estudios en especies mexicanas. Capital natural de México, vol. I: Conocimiento actual de la biodiversidad. Comisión Nacional para el Conocimiento y Uso de la Biodiversidad (CONABIO). Cd. Mx., México. Pp. 437-494.
Qian X., C. Wang y M. Tian. 2013. Genetic diversity and population differentiation of Calanthe tsoongiana, a rare and endemic orchid in China. International Journal of Molecular Sciences 14(10): 20399-20413. DOI: https://doi.org/10.3390/ijms141020399 DOI: https://doi.org/10.3390/ijms141020399
R Core Team. 2017. R: A language and environment for statistical computing. R Foundation for Statistical Computing. Vienna, Austria. https://www.R-project.org/.
Rojas-Méndez, K. J., J. M. Peñaloza-Ramírez, V. Rocha-Ramírez, A. Cortés-Palomec, R. A. McCauley y K. Oyama. 2017. Massive extraction of the Orchid Laelia speciosa (HBK) Schltr. for trading in local markets affect its population genetic structure in a fragmented landscape in Central Mexico. Tropical Conservation Science 10: 1-14. DOI: https://doi.org/10.1177/1940082917693235 DOI: https://doi.org/10.1177/1940082917693235
SEMARNAT. 2010. NORMA Oficial Mexicana NOM-059-SEMARNAT-2010. Protección ambiental-Especies nativas de México de flora y fauna silvestres-categorías de riesgo y especificaciones para su inclusión, exclusión o cambio-lista de especies en riesgo. Secretaría del Medio Ambiente y Recursos Naturales. Diario Oficial de la Federación. Cd. Mx., México. http://dof.gob.mx/nota_detalle.php?codigo=5173091&fecha=30/12/2010.
Slatkin, M. 1994. Gene flow and population structure. In: Real, L. A. (ed.). Ecological Genetics. Princeton University Press. Princeton, USA. Pp. 3-17. DOI:
Smith, J. L., K. L. Hunter y R. B. Hunter. 2002. Genetic variation in the terrestrial orchid Tipularia discolor. Southeastern Naturalist 1(1): 17-26. DOI: https://doi.org/10.1656/1528-7092(2002)001%5B0017:gvitto%5D2.0.co;2 DOI: https://doi.org/10.1656/1528-7092(2002)001[0017:GVITTO]2.0.CO;2
Swofford, D. L. 2003. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4.0a147. Sinauer associates, Inc. Sunderland, USA.
Tajima, F. 1983. Evolutionary relationship of ADN sequences in finite populations. Genetics 105(2): 437-460. DOI: https://doi.org/10.1093/genetics/105.2.437
Tajima, F. 1989. Statistical method for testing the Neutral Mutation Hypothesis by DNA Polymorphism. Genetics 123(3): 585-595. DOI: https://doi.org/10.1093/genetics/123.3.585
Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin y D. G. Higgins. 1997. The Clustal_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25(24): 4876-4882. DOI: https://doi.org/10.1093/nar/25.24.4876 DOI: https://doi.org/10.1093/nar/25.24.4876
Vargas, C. F., V. Parra-Tabla, P. Feinsinger y J. Leirana-Alcocer. 2006. Genetic diversity and structure in fragmented populations of the tropical orchid Myrmecophila christinae var. christinae. Biotropica 38(6): 754-763. DOI: https://doi.org/10.1111/j.1744-7429.2006.00205.x DOI: https://doi.org/10.1111/j.1744-7429.2006.00205.x
White, T. J., T. Bruns, S. Lee y J. Taylor. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M. A., D. H. Gelfand, J. J. Sninsky y T. J. White (eds.). PCR Protocols: a guide to methods and applications. Academic Press Inc. New York, USA. Pp. 315-322. DOI: https://doi.org/10.1016/B978-0-12-372180-8.50042-1 DOI: https://doi.org/10.1016/B978-0-12-372180-8.50042-1
Wright, S. 1951. The genetical structure of populations. Annals of Eugenics 15(1): 323-354. DOI: https://doi.org/10.1111/j.1469-1809.1949.tb02451.x DOI: https://doi.org/10.1111/j.1469-1809.1949.tb02451.x
Published
How to Cite
-
Abstract3663
-
PDF (Español)814
-
HTML (Español)273
Issue
Section
License
Copyright (c) 2018 Acta Botanica Mexicana

This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.
Authors who publish in this journal accept the following conditions:
In accordance with copyright legislation, Acta Botanica Mexicana recognizes and respects the moral rights of authors, as well as the ownership of the patrimonial right, which will be assigned to the journal for its dissemination in open access. Acta Botanica Mexicana does not charge authors for sending and processing articles for publication.
All the texts published by Acta Botanica Mexicana - without exception- are distributed under the Creative Commons 4.0 Attribution-Non Commercial License (CC BY-NC 4.0 International), which allows third parties to use what is published whenever they mention the authorship of the work and the first publication in this journal.
The authors can make other independent and additional contractual agreements for the non-exclusive distribution of the version of the article published in Acta Botanica Mexicana (for example, include it in an institutional repository or publish it in a book) as long as they clearly indicate that the work was published for the first time in Acta Botanica Mexicana
As a consequence, the copyeditors will request you, together with the galley review, to issue your Letter-Transfer of Ownership of Copyright form of the first publication duly completed and signed by the author(s). This letter should be sent by email in pdf file to the email: acta.botanica@inecol.mx (Letter-Transfer of Ownership of Copyright).


